Publications

Peer Reviewed Publications

• Berggren K, Wolf A, Asenjo JA, Andrews BA, Tjerneld F. The surface exposed amino acid residues of monomeric proteins determine the partitioning in aqueous two-phase systems. BiochimicaetBiophysicaActa. 2002; 1596(2):253-68. PMID: 12007607.

• *Zhang Y, Wolf-Yadlin A, Ross PL, Pappin DJ, Rush J, Lauffenburger DA, et al. Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules. Molecular & cellular proteomics : MCP. 2005;4(9):1240-50. doi: 10.1074/mcp.M500089-MCP200. PMID: 15951569.

• *Wolf-Yadlin A, Kumar N, Zhang Y, Hautaniemi S, Zaman M, Kim HD, Grantcharova V, Lauffenburger DA, White FM. Effects of HER2 overexpression on cell signaling networks governing proliferation and migration. Molecular systems biology. 2006;2:54. doi: 10.1038/msb4100094. PMID: 17016520; PMCID: PMC1682017.

• Kumar N, Wolf-Yadlin A, White FM, Lauffenburger DA. Modeling HER2 effects on cell behavior from mass spectrometry phosphotyrosine data. PLoS computational biology. 2007;3(1):e4. doi: 10.1371/journal.pcbi.0030004. PMID: 17206861; PMCID: PMC1761044.

• * Zhang Y, Wolf-Yadlin A, White FM. Quantitative proteomic analysis of phosphotyrosine-mediated cellular signaling networks. Methods in molecular biology (Clifton, NJ). 2007;359:203-12. doi: 10.1007/978-1-59745-255-7_14. PMID: 17484120.

• Wolf-Yadlin A, Hautaniemi S, Lauffenburger DA, White FM. Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks. Proceedings of the National Academy of Sciences of the United States of America. 2007;104(14):5860-5. doi: 10.1073/pnas.0608638104. PMID: 17389395.

• Gordus A, Krall JA, Beyer EM, Kaushansky A, Wolf-Yadlin A, Sevecka M, Chang BH, Rush J, MacBeath G. Linear combinations of docking affinities explain quantitative differences in RTK signaling. Molecular systems biology. 2009;5:235. doi: 10.1038/msb.2008.72. PMID: 19156127; PMCID: PMC2644171.

• Locasale JW, Wolf-Yadlin A. Maximum entropy reconstructions of dynamic signaling networks from quantitative proteomics data. PloS one. 2009;4(8):e6522. Epub 2009/08/27. doi: 10.1371/journal.pone.0006522. PMID: 19707567; PMCID: PMC2728537.

• * Sevecka M, Wolf-Yadlin A, MacBeath, G.Lysate microarrays enable high-throughput, quantitative investigations of cellular signaling. Molecular & cellular proteomics : MCP. 2011;10(4):M110 005363. doi: 10.1074/mcp.M110.005363. PMID: 21296872; PMCID: PMC3069345.

• * Wolf-Yadlin A, Sevecka M, MacBeath G. Dissecting protein function and signaling using protein microarrays. CurrOpinChem Biol. 2009;13(4):398-405. doi: 10.1016/j.cbpa.2009.06.027. PMID: 19660979; PMCID: PMC2811369.

• Navare A, Sova P, Purdy DE, Weiss JM, Wolf-Yadlin A, Korth MJ, Chang ST, Proll SC, Krasnoselsky AL, Palermo RE, Katze MG. “Quantitative Proteomic Analysis of HIV-1 Infected CD4+ T Cells Reveals an Early Host Response in Important Biological Pathways: Protein Synthesis, Cell Proliferation, and T-cell Activation”. 2012;429(1):37-46. doi: 10.1016/j.virol.2012.03.026. PMID: 22542004; PMCID: PMC3358407.

• Moore KE, Carlson SM, Cheung P, Chua KF, Wolf-Yadlin A, Gozani O. “Engineering a Natural Affinity Reagent for Detection and Proteomic Analysis of Lysine Methylation”. Molecular cell. 2013;50(3):444-56. doi: 10.1016/j.molcel.2013.03.005. PMID: 23583077; PMCID: PMC3660009.

• Dai X, James RG, Habib T, Singh S, Jackson S, Khim S, Moon RT, Liggitt D, Wolf-Yadlin A, Buckner J, and Rawlings D. A disease-associated PTPN22 variant promotes systemic autoimmunity in murine models. The Journal of clinical investigation. 2013;123(5):2024-36. doi: 10.1172/JCI66963. PMID: 23619366; PMCID: PMC3638909.

• *Wagner JP*, Wolf-Yadlin A, Sevecka M, Grenier JK, Root DE, Lauffenburger DA, and MacBeath G. “Receptor Tyrosine Kinases Fall Into Distinct Classes Based on Their Inferred Signaling Networks”. Sci Signal. 2013 Jul 16;6(284):ra58. doi: 10.1126/scisignal.2003994.

• James RG, Bosch KA, Yang PT, Robin NC, Toroni RA, Kulikauskas RM, Biechele TL, Berndt JD, von Haller PD, Eng J, Wolf-Yadlin A, Chien AJ, and Moon RT. Protein Kinase PKN1 represses Wnt/beta-catenin signaling in human melanoma cells. The Journal of biological chemistry. 2013. doi: 10.1074/jbc.M113.500314. PMID: 24114839.

In all papers marked with an * Wolf-Yadlin A is co-first author.